Up to date and corrected waypoints for all tamers, beasts of burden, and spirits in Pandaria:

/way Kun-Lai Summit 64.8 93.6 Thundering Pandaren Spirit
/way Kun-Lai Summit 67.87 84.69 Dos'Ryga
/way The Jade Forest 28.8 36.0 Whispering Pandaren Spirit
/way The Jade Forest 57.04 29.12 Nitun
/way The Jade Forest 48 54 Hyuna of the Shrines
/way The Jade Forest 48.42 70.96 Ka'wi the Gorger
/way Krasarang Wilds 65 42.7 Mo'ruk
/way Krasarang Wilds 37 33.34 Skitterer Xi'a
/way Valley of the Four Winds 25.29 78.54 Greyhoof
/way Dread Wastes 61.2 87.6 Flowing Pandaren Spirit
/way Dread Wastes 55 38 Wastewalker Shu
/way Dread Wastes 26.18 50.27 Gorespine
/way Townlong Steppes 36 52 Seeker Zusshi
/way Townlong Steppes 57.0 42.2 Burning Pandaren Spirit
/way Kun-Lai Summit 35.18 56.17 Kafi
/way Kun-Lai Summit 36 74 Courageous Yon
/way Townlong Steppes 72.26 79.78 Ti'un the Wanderer
/way Vale of Eternal Blossoms 11 71 No-No
/way Vale of Eternal Blossoms 31 74 Aki the Chosen
/way Valley of the Four Winds 40.54 43.67 Lucky Yi
/way Valley of the Four Winds 46 44 Farmer Nishi

After pasting that into Paste (an addon that allows you to enter several lines at once), TomTom should point you towards Farmer Nishi. Just keep following the arrow, it takes you around Pandaria in a circuit.

old news no doubt but I didn't play MoP and just started doing pet battles recently. What shrine is being mentioned? is it some area in the city for horde/alliance? trying to find w/e gate is blocking Farmer Nishi, Lucky Yi, etc thanks much

He means the main city for your faction in MOP, where your portal takes you.
Horde: Shrine of Two Moons
Alliance: Shrine of Seven Stars

If you're a tryhard like me (at least, I am during pet week), here are all 21 (spirits, tamers, and beasts), listed in the optimized order set forth in the image linked above on 3 May 2017.

/way Kun-Lai Summit:Pandaria 64.8 93.6 Thundering Pandaren Spirit
/way Kun-Lai Summit:Pandaria 67.87 84.69 Dos'Ryga
/way The Jade Forest:Pandaria 28.8 36.0 Whispering Pandaren Spirit
/way Jade Forest:Pandaria 57.04 29.12 Nitun
/way The Jade Forest:Pandaria 48 54 Hyuna of the Shrines
/way Jade Forest:Pandaria 48.42 70.96 Ka'wi the Gorger
/way Krasarang Wilds:Pandaria 62 45 Mo'ruk
/way Krasarang Wilds:Pandaria 36.23 37.34 Skitterer Xi'a
/way Valley of the Four Winds 25.29 78.54 Greyhoof
/way Dread Wastes 61.2 87.6 Flowing Pandaren Spirit
/way Dread Wastes 55 38 Wastewalker Shu
/way Dread Wastes 26.18 50.27 Gorespine
/way Townlong Steppes 36 52 Seeker Zusshi
/way Townlong Steppes 57.0 42.2 Burning Pandaren Spirit
/way Kun-Lai Summit:Pandaria 35.18 56.17 Kafi
/way Kun-Lai Summit:Pandaria 36 74 Courageous Yon
/way Townlong Steppes 72.26 79.78 Ti'un the Wanderer
/way Vale of Eternal Blossoms:Pandaria 11 71 No-No
/way Vale of Eternal Blossoms:Pandaria 31 74 Aki the Chosen
/way Valley of the Four Winds 40.54 43.67 Lucky Yi
/way Valley of the Four Winds 46 44 Farmer Nishi

How do I force a Tom Tom macro likethis to do the waypoints in the order they were written? If I have it add next closest automatically it goes through a different and longer route.

My Tomtom didn't like Kun-Lai Summit:Pandaria, but it worked without the Pandaria added to it. New paste copy:

/way Kun-Lai Summit 64.8 93.6 Thundering Pandaren Spirit
/way Kun-Lai Summit 67.87 84.69 Dos'Ryga
/way The Jade Forest:Pandaria 28.8 36.0 Whispering Pandaren Spirit
/way Jade Forest:Pandaria 57.04 29.12 Nitun
/way The Jade Forest:Pandaria 48 54 Hyuna of the Shrines
/way Jade Forest:Pandaria 48.42 70.96 Ka'wi the Gorger
/way Krasarang Wilds:Pandaria 62 45 Mo'ruk
/way Krasarang Wilds:Pandaria 36.23 37.34 Skitterer Xi'a
/way Valley of the Four Winds 25.29 78.54 Greyhoof
/way Dread Wastes 61.2 87.6 Flowing Pandaren Spirit
/way Dread Wastes 55 38 Wastewalker Shu
/way Dread Wastes 26.18 50.27 Gorespine
/way Townlong Steppes 36 52 Seeker Zusshi
/way Townlong Steppes 57.0 42.2 Burning Pandaren Spirit
/way Kun-Lai Summit 35.18 56.17 Kafi
/way Kun-Lai Summit 36 74 Courageous Yon
/way Townlong Steppes 72.26 79.78 Ti'un the Wanderer
/way Vale of Eternal Blossoms:Pandaria 11 71 No-No
/way Vale of Eternal Blossoms:Pandaria 31 74 Aki the Chosen
/way Valley of the Four Winds 40.54 43.67 Lucky Yi
/way Valley of the Four Winds 46 44 Farmer Nishi

TomTom and/or Blizz changed their syntax again, so here's an update to the update (but thanks Antisceptic for the 1 Jan 2019 update!).

This list assumes you're doing all 21 pet battle dailies: spirits, masters, and Beasts of Fable. Some clever person did the hard work of mathematical optimization (Travelling Salesman Problem). The 8.1.5 (BfA) portal changes don't affect this grand circuit much, as you still need to hit your faction shrine (Two Moons/Seven Stars) in Vale of Eternal Blossoms to pick up the Beasts of Fable dailies.

Anyway, because we're working with a longer order, and not the one in the illo above, that's why you start with Nishi, not Thundering Pandaren Spirit.

/way Kun-Lai Summit 64.8 93.6 Thundering Pandaren Spirit
/way Kun-Lai Summit 67.87 84.69 Dos'Ryga
/way The Jade Forest 28.8 36.0 Whispering Pandaren Spirit
/way The Jade Forest 57.04 29.12 Nitun
/way The Jade Forest 48 54 Hyuna of the Shrines
/way The Jade Forest 48.42 70.96 Ka'wi the Gorger
/way Krasarang Wilds 62 45 Mo'ruk
/way Krasarang Wilds 36.23 37.34 Skitterer Xi'a
/way Valley of the Four Winds 25.29 78.54 Greyhoof
/way Dread Wastes 61.2 87.6 Flowing Pandaren Spirit
/way Dread Wastes 55 38 Wastewalker Shu
/way Dread Wastes 26.18 50.27 Gorespine
/way Townlong Steppes 36 52 Seeker Zusshi
/way Townlong Steppes 57.0 42.2 Burning Pandaren Spirit
/way Kun-Lai Summit 35.18 56.17 Kafi
/way Kun-Lai Summit 36 74 Courageous Yon
/way Townlong Steppes 72.26 79.78 Ti'un the Wanderer
/way Vale of Eternal Blossoms 11 71 No-No
/way Vale of Eternal Blossoms 31 74 Aki the Chosen
/way Valley of the Four Winds 40.54 43.67 Lucky Yi
/way Valley of the Four Winds 46 44 Farmer Nishi

The Eternal Strider is a must for Farmer Nishi. You can kill Siren and Toothbreaker with it.

For Aki you need to use a Hopling because really Stormlash is the big danger. I find if you use a big critter killer, like say Xu-Fu, and switch in the Hopling for Stormlash, you will increase you chance of success by a lot.

Note that for all the tamers, except Zusshi and Beasts, you can leave a level 1 toon at the pet battle and just switch between toons. On rare occasions a hawk will come out of nowhere on the Thundering Spirit. : (

/way The Jade Forest 48 54 Hyuna of the Shrines
/way Valley of the Four Winds 46 44 Farmer Nishi
/way Dread Wastes 55 38 Wastewalker Shu
/way Kun-Lai Summit 36 74 Courageous Yon
/way Townlong Steppes 36 52 Seeker Zusshi
/way Krasarang Wilds 62 45 Mo'ruk
/way Vale of Eternal Blossoms 31 74 Aki the Chosen

/way Kun-Lai Summit 64.8 93.6 Thundering Pandaren Spirit
/way Kun-Lai Summit 36 74 Courageous Yon
/way Townlong Steppes 57.0 42.2 Burning Pandaren Spirit
/way Townlong Steppes 36 52 Seeker Zusshi
/way Dread Wastes 55 38 Wastewalker Shu
/way Dread Wastes 61.2 87.6 Flowing Pandaren Spirit
/way Vale of Eternal Blossoms 31 74 Aki the Chosen
/way Valley of the Four Winds 46 44 Farmer Nishi
/way Krasarang Wilds 62 45 Mo'ruk
/way The Jade Forest 48 54 Hyuna of the Shrines
/way The Jade Forest 28.8 36.0 Whispering Pandaren Spirit
/cway

Im lazy and needed this... :)

It would be super awesome if you could add the breeds for the pets you are suggesting. The most awesome thing would be, if you made a seperate tab with various different useful pets and their best breeds. :)

Hey Louk!
Almost all my strategies (99%) do not require a specific breed :-)
I hear you, and such a guide of recommended breeds for certain pets would make perfect sense, but right now I am focusing on other goals with Xu-Fu's guides.

If you have a quick port to your faction's shrine (e.g. as a Mage), you can use it after Water Spirit and Mo'ruk to get to the next trainer faster.

I'd like to see a map that includes all of the Pandaria activities (Beasts, Trainers and Spirits) at once, but I have no idea where it would be put. :)

I often miss that pesky Water Spirit. :P

This is the solved TSP for a complete circuit of all 21 fights with no teleporting: http://i.imgur.com/EwNOFZi.png

Other than parked alts or strategic hearthstone attunement, it seems your shortest travel distance is to make two sweeps starting from Vale (NW route from Farmer Nishi, clockwise spiral from Thundering Pandaren Spirit for the rest), or [Alliance] one from Vale and two from Paw'don village. Unfortunately, the Peak of Serenity (monk teleport) does not seem to be a shortcut to any of these (the closest point is Kafi and Yon is closer).

(Anyone who would like to make a prettier graphic is welcome to do so without attribution.)

I've tested this now. With efficient teams, no bad crit luck, and only a little stopping to hit rares or gather, an Alliance character could battle from Shrine to Nishi to Zusshi in about 25 minutes, from Paw'don to Gorespine in about 17, from Paw'don to Nitun in about 6, and from Shrine to Whispering Pandaren Spirit in about 7. Taking four trips cuts out long flights of nothing except for the one to Mo'ruk. Incidentally, I have slow loading and it is still slightly faster to take the Dalaran portal to Shrine than it is to fly back from WPS. All in all, this takes longer than most people would want to make a daily routine even in the best of circumstances.

One good route for Horde is to pick up Beasts of Fable quests, then start with Zusshi (AFK flight path to or hearthstone at Shado-Pan Garrison / Isle of Thunder), to Nishi to Mo'ruk to Gorespine; port to Shrine, then sweep the rest starting from Thundering Pandaren Spirit.